Domain ID e3km9B16

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: A2M_BRD
UID: 001813187
Type: Automatic domain
Parent: e3pvmB5
Range: B:460-565,B:612-673
Ligands: CD
PDB: 3km9
PDB Description: Complement C5
UniProt: P01031
Hsap BLAST neighbor: P01031
Species: Homo sapiens

Structure of domain e3km9B16

Domains in the same chain:

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e3km9B18 B:22-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B17 B:122-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B13 B:223-348 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B15 B:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B16 B:460-565,B:612-673 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B21 B:566-611,B:766-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B19 B:679-765 Anaphylotoxins (complement system) Anaphylotoxins (complement system) Anaphylotoxins (complement system)
e3km9B14 B:822-932 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B20 B:933-985,B:1309-1369 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3km9B5 B:986-1308 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3km9B12 B:1370-1514 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f

Domains in the same PDB:

e3km9A18 A:22-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A17 A:122-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A13 A:223-348 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A15 A:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A16 A:460-565,A:612-673 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A21 A:566-611,A:766-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A19 A:679-765 Anaphylotoxins (complement system) Anaphylotoxins (complement system) Anaphylotoxins (complement system)
e3km9A14 A:822-932 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9A20 A:933-985,A:1309-1369 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3km9A5 A:986-1308 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3km9A12 A:1370-1514 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3km9B18 B:22-121 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B17 B:122-222 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B13 B:223-348 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B15 B:349-459 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B16 B:460-565,B:612-673 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B21 B:566-611,B:766-821 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B19 B:679-765 Anaphylotoxins (complement system) Anaphylotoxins (complement system) Anaphylotoxins (complement system)
e3km9B14 B:822-932 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3km9B20 B:933-985,B:1309-1369 jelly-roll Spermadhesin, CUB domain Spermadhesin, CUB domain
e3km9B5 B:986-1308 Repetitive alpha hairpins alpha/alpha toroid alpha/alpha toroid
e3km9B12 B:1370-1514 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3km9X1 X:129-230 beta-Grasp Ubiquitin-related Ubiquitin-like
e3km9Y1 Y:129-230 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e3km9B16 of H-group "Immunoglobulin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3km9Y1 B:X,Y,Z->Y:x,y,z Ubiquitin-related Interaction Interface Pymol