Domain ID e3knk01

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Ribosomal L27 protein
  • F: Ribosomal_L27
UID: 000384145
Type: Automatic domain
Parent: e3j6bR1
Range: 0:2-85
Ligands: MG
PDB: 3knk
PDB Description:
Hsap BLAST neighbor: Q9P0M9
Species:

Structure of domain e3knk01

Domains in the same chain:

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e3knk01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein

Domains in the same PDB:

e3knk01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3knk11 1:3-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3knk21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3knk31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3knk41 4:36-66 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3knk51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3knk61 6:8-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3knk71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3knk81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3knk91 9:2-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3knkC1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3knkC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3knkD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3knkD2 D:127-273 SH3 SH3 SH3
e3knkF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3knkG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3knkH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3knkH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3knkI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3knkI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3knkN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3knkO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3knkR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3knkU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3knkV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3knkW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3knkX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3knkY1 Y:2-102 SH3 SH3 SH3
e3knkZ1 Z:2-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3knkZ2 Z:92-178 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3knk01 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j6bR1 0:x,y,z->Q:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3j6bR1 0:x,y,z->S:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol