ECOD: domain e3knnR1

Domain ID e3knnR1

A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: Ribosomal_S18

UID:	000384743
Type:	Automatic domain
Parent:	e2uubR1
Range:	R:19-88
PDB:	3knn
PDB Description:
Hsap BLAST neighbor:	Q9Y3D5
Species:

Domain
In chain context
In PDB context

Structure of domain e3knnR1

Domains in the same chain:

Download Pymol

e3knnR1	R:19-88	HTH	HTH	tri-helical

Domains in the same PDB:

e3knnC2	C:2-106	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e3knnC1	C:107-208	T-fold	Ribosomal protein S3-C	Ribosomal protein S3-C
e3knnE1	E:5-73	dsRBD-like	dsRNA-binding domain-like	dsRNA-binding domain-like
e3knnE2	E:74-155	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3knnF1	F:1-101	Alpha-beta plaits	Ribosomal protein S6	Ribosomal protein S6
e3knnG1	G:2-156	Ribosomal protein S7	Ribosomal protein S7	Ribosomal protein S7
e3knnH1	H:1-66	R3H domain-like	Ribosomal protein S8, N-terminal domain	Ribosomal protein S8, N-terminal domain
e3knnH2	H:67-138	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain	Ribosomal protein S8, C-terminal domain
e3knnJ1	J:3-101	Alpha-beta plaits	Ribosomal protein S10	Ribosomal protein S10
e3knnK1	K:11-129	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3knnL1	L:2-126	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3knnN1	N:2-61	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e3knnO1	O:2-89	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain	S15/NS1 RNA-binding domain
e3knnP1	P:1-84	Ribosomal protein S16	Ribosomal protein S16	Ribosomal protein S16
e3knnR1	R:19-88	HTH	HTH	tri-helical
e3knnT1	T:8-106	Spectrin repeat-like	Ribosomal protein S20	Ribosomal protein S20

Structural contacts of domain e3knnR1 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3knnF1	R:x,y,z->F:X,Y,Z	Ribosomal protein S6	Interaction Interface Pymol
e3knnK1	R:x,y,z->K:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol