Domain ID e3kno51

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000384220
Type: Automatic domain
Parent: e2j0151
Range: 5:2-60
Ligands: MG ZN
PDB: 3kno
PDB Description:
Species:

Structure of domain e3kno51

Domains in the same chain:

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e3kno51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3kno01 0:2-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3kno11 1:3-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3kno21 2:2-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3kno31 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3kno41 4:36-85 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3kno51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3kno61 6:8-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3kno71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3kno81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3kno91 9:2-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3knoC1 C:18-66,C:159-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3knoC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3knoD1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3knoD2 D:127-273 SH3 SH3 SH3
e3knoF1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3knoG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3knoH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3knoH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3knoI2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3knoI1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3knoN1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3knoO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3knoR1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3knoU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3knoV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3knoW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3knoX1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3knoY1 Y:2-102 SH3 SH3 SH3
e3knoZ1 Z:2-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3knoZ2 Z:92-178 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3kno51 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3knoW1 5:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e3knoR1 5:x,y,z->R:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol