Domain ID e3koyD5

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  • A: a+b two layers
  • X: Dodecin subunit-like
  • H: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
  • T: D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
  • F: OAM_dimer
UID: 001240916
Type: Automatic domain
Parent: e1xrsB1
Range: D:509-587
PDB: 3koy
PDB Description: D-ornithine aminomutase E component
UniProt: E3PY95
Species: [Clostridium] sticklandii

Structure of domain e3koyD5

Domains in the same chain:

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e3koyD3 D:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koyD5 D:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koyD1 D:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like

Domains in the same PDB:

e3koyA3 A:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koyA5 A:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koyA1 A:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koyB3 B:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koyB5 B:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koyB1 B:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koyC3 C:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koyC5 C:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koyC1 C:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koyD3 D:5-506 TIM beta/alpha-barrel TIM barrels TIM barrels
e3koyD5 D:509-587 Dodecin subunit-like D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
e3koyD1 D:591-740 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3koyE1 E:5-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related
e3koyF1 F:5-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related
e3koyG1 G:5-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related
e3koyH1 H:5-114 D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related D-ornithine aminomutase S component-related

Structural contacts of domain e3koyD5 of H-group "D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3koyB3 D:x,y,z->B:X,Y,Z TIM barrels Interaction Interface Pymol
e3koyB5 D:x,y,z->B:X,Y,Z D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain Interaction Interface Pymol
e3koyC1 D:x,y,z->C:-X,Y-1/2,-Z Class I glutamine amidotransferase-like Interaction Interface Pymol