Domain ID e3kv4A2

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Double-stranded beta-helix
  • T: Double-stranded beta-helix
  • F: JmjC
UID: 001411386
Type: Manual and representative domain
Range: A:78-337
Ligands: EDO FE2 NI OGA
PDB: 3kv4
PDB Description: PHD FINGER PROTEIN 8
UniProt: Q9UPP1
Hsap BLAST neighbor: Q9UPP1
Species: Homo sapiens

Structure of domain e3kv4A2

Structural contacts of domain e3kv4A2 of H-group "Double-stranded beta-helix":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kv4A3 A:x,y,z->A:X-1/2,-Y-1/2,-Z+1/4 C-terminal helical domain in Jumonji domain-containing histone demethylases Interaction Interface Pymol
e3kv4A3 A:x,y,z->A:-Y-1/2,X+1/2,Z-1/4 C-terminal helical domain in Jumonji domain-containing histone demethylases Interaction Interface Pymol
e3kv4A1 A:-Y-1/2,X+1/2,Z-1/4->A:x,y,z RING/U-box-like Interaction Interface Pymol
e3kv4A2 A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/4 Double-stranded beta-helix Interaction Interface Pymol
e3kv4A2 A:X-1/2,-Y+1/2,-Z+1/4->A:x,y,z Double-stranded beta-helix Interaction Interface Pymol
e3kv4A1 A:Y-1,X,-Z->A:x,y,z RING/U-box-like Interaction Interface Pymol
e3kv4A2 A:x,y,z->A:Y-1,X+1,-Z Double-stranded beta-helix Interaction Interface Pymol
e3kv4A2 A:Y-1,X+1,-Z->A:x,y,z Double-stranded beta-helix Interaction Interface Pymol