ECOD: domain e3kv5A1

Domain ID e3kv5A1

A: few secondary structure elements
X: RING/U-box-like
H: RING/U-box-like
T: FYVE/PHD zinc finger
F: PHD

UID:	001616922
Type:	Automatic domain
Parent:	e3kv4A1
Range:	A:33-98
Ligands:	FE2 ZN
PDB:	3kv5
PDB Description:	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1D
UniProt:	Q6ZMT4
Hsap BLAST neighbor:	Q6ZMT4
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3kv5A1

Domains in the same chain:

Download Pymol

e3kv5A1	A:33-98	RING/U-box-like	RING/U-box-like	FYVE/PHD zinc finger
e3kv5A2	A:99-372	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e3kv5A3	A:373-479	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases

Domains in the same PDB:

e3kv5A1	A:33-98	RING/U-box-like	RING/U-box-like	FYVE/PHD zinc finger
e3kv5A2	A:99-372	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e3kv5A3	A:373-479	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases
e3kv5D3	D:32-98	RING/U-box-like	RING/U-box-like	FYVE/PHD zinc finger
e3kv5D1	D:99-372	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e3kv5D2	D:373-479	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases	C-terminal helical domain in Jumonji domain-containing histone demethylases

Structural contacts of domain e3kv5A1 of H-group "RING/U-box-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3kv5A2	A:X-1/2,-Y-1/2,-Z->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol