Domain ID e3m85B1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: EXOSC1
UID: 000389949
Type: Automatic domain
Parent: e2nn6I1
Range: B:57-179
Ligands: ZN
PDB: 3m85
PDB Description: Putative uncharacterized protein AF_0206
UniProt: O30033
Species: Archaeoglobus fulgidus

Structure of domain e3m85B1

Domains in the same chain:

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e3m85B2 B:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85B1 B:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3m85A2 A:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85A1 A:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3m85B2 B:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85B1 B:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3m85C2 C:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85C1 C:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3m85D2 D:8-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85D1 D:154-250 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85E2 E:6-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85E1 E:154-250 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85F2 F:8-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85F1 F:154-253 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85G2 G:1-167 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85G1 G:168-258 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85H2 H:1-167 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85H1 H:168-258 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85I2 I:1-167 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85I1 I:168-259 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e3m85B1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3m85E2 B:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3m85G2 B:X,Y,Z->G:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3m85B1 B:x,y,z->B:-X,Y,-Z Nucleic acid-binding proteins Interaction Interface Pymol
e3m85B1 B:-X,Y,-Z->B:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e3m85D2 B:X,Y,Z->D:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3m85A1 B:x,y,z->A:-X,Y,-Z Nucleic acid-binding proteins Interaction Interface Pymol
e3m85A2 B:x,y,z->A:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol