Domain ID e3m85D1

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  • A: a+b two layers
  • X: Ribonuclease PH domain 2-like
  • H: Ribonuclease PH domain 2
  • T: Ribonuclease PH domain 2
  • F: RNase_PH_C
UID: 000389953
Type: Automatic domain
Parent: e2je6B1
Range: D:154-250
PDB: 3m85
PDB Description: Probable exosome complex exonuclease 1
UniProt: O29757
Species: Archaeoglobus fulgidus

Structure of domain e3m85D1

Domains in the same chain:

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e3m85D2 D:8-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85D1 D:154-250 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e3m85A2 A:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85A1 A:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3m85B2 B:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85B1 B:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3m85C2 C:1-56 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3m85C1 C:57-179 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3m85D2 D:8-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85D1 D:154-250 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85E2 E:6-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85E1 E:154-250 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85F2 F:8-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85F1 F:154-253 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85G2 G:1-167 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85G1 G:168-258 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85H2 H:1-167 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85H1 H:168-258 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3m85I2 I:1-167 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3m85I1 I:168-259 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e3m85D1 of H-group "Ribonuclease PH domain 2":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3m85G2 D:X,Y,Z->G:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3m85G1 D:X,Y,Z->G:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e3m85A2 D:x,y,z->A:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3m85E1 D:x,y,z->E:-Y,X,Z-1/4 Ribonuclease PH domain 2 Interaction Interface Pymol
e3m85B2 D:x,y,z->B:-Y,X,Z-1/4 alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol