ECOD: domain e3m85D1

Domain ID e3m85D1

A: a+b two layers
X: Ribonuclease PH domain 2-like
H: Ribonuclease PH domain 2
T: Ribonuclease PH domain 2
F: RNase_PH_C

UID:	000389953
Type:	Automatic domain
Parent:	e2je6B1
Range:	D:154-250
PDB:	3m85
PDB Description:	Probable exosome complex exonuclease 1
UniProt:	O29757
Species:	Archaeoglobus fulgidus

Domains in the same chain:

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e3m85D2	D:8-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85D1	D:154-250	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Domains in the same PDB:

e3m85A2	A:1-56	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e3m85A1	A:57-179	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3m85B2	B:1-56	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e3m85B1	B:57-179	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3m85C2	C:1-56	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Ribosomal L27 protein
e3m85C1	C:57-179	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3m85D2	D:8-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85D1	D:154-250	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3m85E2	E:6-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85E1	E:154-250	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3m85F2	F:8-153	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85F1	F:154-253	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3m85G2	G:1-167	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85G1	G:168-258	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3m85H2	H:1-167	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85H1	H:168-258	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3m85I2	I:1-167	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3m85I1	I:168-259	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Structural contacts of domain e3m85D1 of H-group "Ribonuclease PH domain 2":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3m85G2	D:X,Y,Z->G:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3m85G1	D:X,Y,Z->G:x,y,z	Ribonuclease PH domain 2	Interaction Interface Pymol
e3m85A2	D:x,y,z->A:X,Y,Z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3m85E1	D:x,y,z->E:-Y,X,Z-1/4	Ribonuclease PH domain 2	Interaction Interface Pymol
e3m85B2	D:x,y,z->B:-Y,X,Z-1/4	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol