Domain ID e3mbjA1

Download files:
  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Ribokinase-like
  • T: Ribokinase-like
  • F: Phos_pyr_kin
UID: 000391008
Type: Automatic domain
Parent: e1ub0A1
Range: A:0-290
Ligands: CL IMD MPD MRD SO4 ZN
PDB: 3mbj
PDB Description: Putative phosphomethylpyrimidine kinase
UniProt: Q89ZB9
Hsap BLAST neighbor: O00764
Species:

Structure of domain e3mbjA1

Domains in the same chain:

e3mbjA1 A:0-290 Rossmann-like Ribokinase-like Ribokinase-like

Domains in the same PDB:

e3mbjA1 A:0-290 Rossmann-like Ribokinase-like Ribokinase-like

Structural contacts of domain e3mbjA1 of H-group "Ribokinase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3mbjA1 A:x,y,z->A:-X,-X+Y,-Z Ribokinase-like Interaction Interface Pymol
e3mbjA1 A:-X,-X+Y,-Z->A:x,y,z Ribokinase-like Interaction Interface Pymol
e3mbjA1 A:x,y,z->A:-Y,X-Y,Z Ribokinase-like Interaction Interface Pymol
e3mbjA1 A:-Y,X-Y,Z->A:x,y,z Ribokinase-like Interaction Interface Pymol
e3mbjA1 A:x,y,z->A:X-Y+1/3,-Y+2/3,-Z-1/3 Ribokinase-like Interaction Interface Pymol
e3mbjA1 A:X-Y+1/3,-Y+2/3,-Z-1/3->A:x,y,z Ribokinase-like Interaction Interface Pymol