Domain ID e3medB1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000391035
Type: Automatic domain
Parent: e2zd1B1
Range: B:238-311
Ligands: SO4
PDB: 3med
PDB Description: p51 Reverse transcriptase
UniProt: P04585
Species:

Structure of domain e3medB1

Domains in the same chain:

e3medB2 B:6-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3medB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3medB3 B:312-429 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e3medA8 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3medA7 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3medA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3medA6 A:429-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3medB2 B:6-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3medB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3medB3 B:312-429 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3medB1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3medA6 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3medA8 B:-X+1/2,Y-1/2,-Z+1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3medA6 B:x,y,z->A:-X,Y,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e3medB3 B:x,y,z->B:X,-Y+1,-Z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3medB1 B:x,y,z->B:X,-Y+1,-Z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3medB3 B:X,-Y+1,-Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3medB1 B:X,-Y+1,-Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol