Domain ID e3medA6

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: RNase_H
UID: 001186841
Type: Automatic domain
Parent: e1mu2A3
Range: A:429-552
Ligands: SO4
PDB: 3med
PDB Description: p66 Reverse transcriptase
UniProt: P04585
Hsap BLAST neighbor: P10266
Species:

Structure of domain e3medA6

Domains in the same chain:

e3medA8 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3medA7 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3medA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3medA6 A:429-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3medA8 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3medA7 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3medA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3medA6 A:429-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3medB2 B:6-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3medB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3medB3 B:312-429 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3medA6 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3medB1 A:X,Y,Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3medB3 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3medA6 A:x,y,z->A:-X,Y,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e3medA6 A:-X,Y,-Z+1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3medA8 A:x,y,z->A:X-1/2,Y+1/2,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3medB1 A:-X,Y,-Z+1/2->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3medB3 A:-X,Y,-Z+1/2->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol