Domain ID e3ms121

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000395369
Type: Automatic domain
Parent: e2j0151
Range: 2:2-53
Ligands: MG
PDB: 3ms1
PDB Description:
Species:

Structure of domain e3ms121

Domains in the same chain:

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e3ms121 2:2-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3ms111 1:36-65 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3ms121 2:2-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ms131 3:9-52 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3ms141 4:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3ms151 5:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3ms1C1 C:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ms1C2 C:127-272 SH3 SH3 SH3
e3ms1E1 E:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3ms1F1 F:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3ms1G1 G:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3ms1G2 G:83-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3ms1H2 H:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3ms1H1 H:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3ms1J1 J:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3ms1K1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3ms1N1 N:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3ms1Q1 Q:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3ms1R1 R:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3ms1S1 S:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3ms1T1 T:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3ms1U1 U:2-101 SH3 SH3 SH3
e3ms1V1 V:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3ms1V2 V:93-190 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3ms1W1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3ms1X1 X:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3ms1Y1 Y:1-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3ms1Z1 Z:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3ms121 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ms1S1 2:x,y,z->S:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e3ms1N1 2:x,y,z->N:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol