Domain ID e3myrC2

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  • A: a/b three-layered sandwiches
  • X: Flavodoxin-like
  • H: Class I glutamine amidotransferase-like
  • T: CheY-like
  • F: Oxidored_q6
UID: 000396890
Type: Automatic domain
Parent: e1ublS3
Range: C:3-182
Ligands: CL SF4
PDB: 3myr
PDB Description: Hydrogenase (NiFe) small subunit HydA
UniProt: D3RV29
Species: Allochromatium vinosum

Structure of domain e3myrC2

Domains in the same chain:

e3myrC2 C:3-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3myrC1 C:183-271 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e3myrA2 A:3-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3myrA1 A:183-270 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrB3 B:1003-1037,B:1520-1561 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrB2 B:1038-1080,B:1474-1519 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrB1 B:1081-1319,B:1384-1473 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrB4 B:1320-1383 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3myrC2 C:3-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3myrC1 C:183-271 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrD3 D:1001-1037,D:1520-1561 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrD4 D:1038-1080,D:1474-1519 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrD2 D:1081-1319,D:1384-1473 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrD1 D:1320-1383 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3myrE2 E:3-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3myrE1 E:183-270 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrF3 F:1001-1037,F:1520-1561 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrF4 F:1038-1080,F:1474-1519 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrF2 F:1081-1319,F:1384-1473 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrF1 F:1320-1383 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e3myrG2 G:3-182 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3myrG1 G:183-270 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrH3 H:1003-1037,H:1520-1561 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrH4 H:1038-1080,H:1474-1519 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrH2 H:1081-1319,H:1384-1473 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrH1 H:1320-1383 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e3myrC2 of H-group "Class I glutamine amidotransferase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3myrD4 C:X,Y,Z->D:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3myrD3 C:X,Y,Z->D:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3myrD1 C:X,Y,Z->D:x,y,z all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3myrD2 C:X,Y,Z->D:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3myrC2 C:x,y,z->C:-X,-Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e3myrC1 C:x,y,z->C:-X,-Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e3myrC1 C:-X,-Y,Z->C:x,y,z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e3myrC2 C:-X,-Y,Z->C:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol
e3myrB1 C:X,Y,Z->B:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e3myrD4 C:-X,-Y,Z->D:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol