ECOD: domain e3myrH4

Domain ID e3myrH4

A: a+b two layers
X: FAD-linked reductases, C-terminal domain-like
H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
F: NiFeSe_Hases

UID:	000396910
Type:	Automatic domain
Parent:	e1cc1L4
Range:	H:1038-1080,H:1474-1519
Ligands:	MG NFV SF4
PDB:	3myr
PDB Description:	Nickel-dependent hydrogenase large subunit
UniProt:	D3RV26
Species:	Allochromatium vinosum

Domains in the same chain:

Download Pymol

e3myrH3	H:1003-1037,H:1520-1561	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrH4	H:1038-1080,H:1474-1519	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrH2	H:1081-1319,H:1384-1473	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrH1	H:1320-1383	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

Structural contacts of domain e3myrH4 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3myrG2	H:x,y,z->G:X,Y,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e3myrG1	H:x,y,z->G:X,Y,Z	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Interaction Interface Pymol
e3myrB1	H:x,y,z->B:-X,-Y,Z	alpha-helical domain in nickel-iron hydrogenase, large subunit	Interaction Interface Pymol
e3myrA1	H:x,y,z->A:X,Y,Z	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Interaction Interface Pymol

e3myrA2	A:3-182	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e3myrA1	A:183-270	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrB3	B:1003-1037,B:1520-1561	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrB2	B:1038-1080,B:1474-1519	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrB1	B:1081-1319,B:1384-1473	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrB4	B:1320-1383	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit
e3myrC2	C:3-182	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e3myrC1	C:183-271	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrD3	D:1001-1037,D:1520-1561	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrD4	D:1038-1080,D:1474-1519	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrD2	D:1081-1319,D:1384-1473	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrD1	D:1320-1383	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit
e3myrE2	E:3-182	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e3myrE1	E:183-270	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrF3	F:1001-1037,F:1520-1561	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrF4	F:1038-1080,F:1474-1519	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrF2	F:1081-1319,F:1384-1473	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrF1	F:1320-1383	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit
e3myrG2	G:3-182	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e3myrG1	G:183-270	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e3myrH3	H:1003-1037,H:1520-1561	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrH4	H:1038-1080,H:1474-1519	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3myrH2	H:1081-1319,H:1384-1473	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e3myrH1	H:1320-1383	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit