ECOD: domain e3ndbB4

Domain ID e3ndbB4

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: SRP54

UID:	001160064
Type:	Automatic domain
Parent:	e1ls1A2
Range:	B:90-300
Ligands:	PO4
PDB:	3ndb
PDB Description:	Signal recognition 54 kDa protein
UniProt:	Q57565
Hsap BLAST neighbor:	P61011
Species:	Methanocaldococcus jannaschii

Domain
In chain context
In PDB context

Structure of domain e3ndbB4

Domains in the same chain:

Download Pymol

e3ndbB2	B:2-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e3ndbB4	B:90-300	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3ndbB5	B:301-341,B:365-455	HTH	HTH	tri-helical

Domains in the same PDB:

e3ndbA1	A:1-87	HTH	HTH	Putative DNA-binding domain
e3ndbB2	B:2-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e3ndbB4	B:90-300	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3ndbB5	B:301-341,B:365-455	HTH	HTH	tri-helical

Structural contacts of domain e3ndbB4 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ndbB4	B:x,y,z->B:-X-1,Y,-Z	P-loop domains-related	Interaction Interface Pymol
e3ndbB4	B:-X-1,Y,-Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol
e3ndbA1	B:x,y,z->A:-X-1,-Y,Z	HTH	Interaction Interface Pymol
e3ndbB4	B:x,y,z->B:-X-1,-Y,Z	P-loop domains-related	Interaction Interface Pymol
e3ndbB4	B:-X-1,-Y,Z->B:x,y,z	P-loop domains-related	Interaction Interface Pymol