ECOD: domain e3ndbB5

Domain ID e3ndbB5

A: alpha arrays
X: HTH
H: HTH
T: tri-helical
F: SRP_SPB

UID:	001160066
Type:	Automatic domain
Parent:	e1hq1A1
Range:	B:301-341,B:365-455
PDB:	3ndb
PDB Description:	Signal recognition 54 kDa protein
UniProt:	Q57565
Species:	Methanocaldococcus jannaschii

Domain
In chain context
In PDB context

Structure of domain e3ndbB5

Domains in the same chain:

Download Pymol

e3ndbB2	B:2-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e3ndbB4	B:90-300	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3ndbB5	B:301-341,B:365-455	HTH	HTH	tri-helical

Domains in the same PDB:

e3ndbA1	A:1-87	HTH	HTH	Putative DNA-binding domain
e3ndbB2	B:2-89	Domain of the SRP/SRP receptor G proteins-like	Domain of the SRP/SRP receptor G-proteins	Domain of the SRP/SRP receptor G-proteins
e3ndbB4	B:90-300	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3ndbB5	B:301-341,B:365-455	HTH	HTH	tri-helical

Structural contacts of domain e3ndbB5 of H-group "HTH":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ndbB5	B:x,y,z->B:-X,-Y,Z	HTH	Interaction Interface Pymol
e3ndbB5	B:-X,-Y,Z->B:x,y,z	HTH	Interaction Interface Pymol
e3ndbA1	B:x,y,z->A:X,Y,Z	HTH	Interaction Interface Pymol