Domain ID e3ngbH1

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: V-set
UID: 000139771
Type: Automatic domain
Parent: e2p49B1
Range: H:1-113
PDB: 3ngb
PDB Description: Antigen binding fragment of heavy chain: Antibody VRC01
Hsap BLAST neighbor: A0A0C4DH29
Species: Homo sapiens

Structure of domain e3ngbH1

Domains in the same chain:

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e3ngbH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbH2 H:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e3ngbA1 A:44-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbA2 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbB1 B:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbB2 B:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbC1 C:1-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbC2 C:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbD1 D:44-255,D:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbD2 D:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbE1 E:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbE2 E:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbF1 F:3-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbF2 F:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbG1 G:44-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbG2 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbH2 H:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbI1 I:44-255,I:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbI2 I:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbJ1 J:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbJ2 J:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbK1 K:1-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbK2 K:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbL1 L:3-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbL2 L:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3ngbH1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ngbL1 H:X,Y,Z->L:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ngbG2 H:x,y,z->G:X,Y,Z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e3ngbG1 H:x,y,z->G:X,Y,Z gp120 inner domain Interaction Interface Pymol
e3ngbD1 H:x,y,z->D:X,Y,Z gp120 inner domain Interaction Interface Pymol
e3ngbD2 H:x,y,z->D:X,Y,Z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e3ngbE1 H:x,y,z->E:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3ngbA2 H:x,y,z->A:X,Y,Z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e3ngbG1 H:x,y,z->G:-X-1,Y-1/2,-Z-1 gp120 inner domain Interaction Interface Pymol