Domain ID e3ngbI2

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  • A: a+b two layers
  • X: Ribosomal protein L31e-like
  • H: Ribosomal protein L31e/gp120 outer domain
  • T: Ribosomal protein L31e/gp120 outer domain
  • F: GP120
UID: 001829620
Type: Automatic domain
Parent: e4rfnG1
Range: I:256-473
Ligands: BGC NAG TRS
PDB: 3ngb
PDB Description: Envelope glycoprotein gp160
UniProt: Q0ED31
Species: Human immunodeficiency virus 1

Structure of domain e3ngbI2

Domains in the same chain:

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e3ngbI1 I:44-255,I:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbI2 I:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e3ngbA1 A:44-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbA2 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbB1 B:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbB2 B:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbC1 C:1-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbC2 C:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbD1 D:44-255,D:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbD2 D:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbE1 E:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbE2 E:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbF1 F:3-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbF2 F:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbG1 G:44-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbG2 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbH2 H:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbI1 I:44-255,I:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3ngbI2 I:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3ngbJ1 J:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbJ2 J:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbK1 K:1-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbK2 K:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbL1 L:3-109 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ngbL2 L:110-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3ngbI2 of H-group "Ribosomal protein L31e/gp120 outer domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ngbJ1 I:X,Y,Z->J:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ngbB1 I:X,Y,Z->B:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ngbB2 I:X,Y,Z->B:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ngbK1 I:X,Y,Z->K:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ngbC1 I:x,y,z->C:-X,Y-1/2,-Z Immunoglobulin-related Interaction Interface Pymol