Domain ID e3oceD3

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  • A: alpha arrays
  • X: L-aspartase N-terminal domain-like
  • H: L-aspartase N-terminal domain-like
  • T: L-aspartase N-terminal domain-like
  • F: Lyase_1
UID: 000398144
Type: Automatic domain
Parent: e1vdkA3
Range: D:1-138
Ligands: CL CO
PDB: 3oce
PDB Description: Fumarate lyase:Delta crystallin
UniProt: Q2YLW1
Hsap BLAST neighbor: P07954
Species:

Structure of domain e3oceD3

Domains in the same chain:

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e3oceD3 D:1-138 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e3oceD5 D:139-392 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e3oceD4 D:393-460 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like

Domains in the same PDB:

e3oceA3 A:1-138 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e3oceA5 A:139-392 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e3oceA4 A:393-461 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like
e3oceB3 B:1-138 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e3oceB5 B:139-392 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e3oceB4 B:393-461 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like
e3oceC3 C:1-138 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e3oceC1 C:139-381 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e3oceC2 C:382-460 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like
e3oceD3 D:1-138 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e3oceD5 D:139-392 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e3oceD4 D:393-460 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like

Structural contacts of domain e3oceD3 of H-group "L-aspartase N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3oceA5 D:x,y,z->A:X,Y,Z L-aspartase middle domain-like Interaction Interface Pymol
e3oceB5 D:x,y,z->B:X,Y,Z L-aspartase middle domain-like Interaction Interface Pymol
e3oceC3 D:X-1,Y,Z->C:x,y,z L-aspartase N-terminal domain-like Interaction Interface Pymol
e3oceA5 D:X-1/2,-Y-1/2,-Z->A:x,y,z L-aspartase middle domain-like Interaction Interface Pymol