Domain ID e3ofpL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000402619
Type: Automatic domain
Parent: e2uubL1
Range: L:1-123
PDB: 3ofp
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3ofpL1

Domains in the same chain:

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e3ofpL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3ofpC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3ofpC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3ofpE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3ofpE2 E:78-158 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3ofpF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3ofpG1 G:2-151 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3ofpH1 H:1-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3ofpH2 H:66-129 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3ofpJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3ofpK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ofpL1 L:1-123 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ofpN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3ofpO1 O:1-88 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3ofpP1 P:1-80 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3ofpR1 R:19-73 HTH HTH tri-helical
e3ofpT1 T:2-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3ofpL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ofpH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol