Domain ID e3ohdL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000403448
Type: Automatic domain
Parent: e2uubL1
Range: L:5-129
Ligands: MG
PDB: 3ohd
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e3ohdL1

Domains in the same chain:

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e3ohdL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e3ohdC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3ohdC1 C:107-208 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3ohdE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3ohdE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3ohdF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3ohdG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3ohdH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3ohdH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3ohdJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3ohdK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ohdL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3ohdN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3ohdO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3ohdP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3ohdR1 R:19-88 HTH HTH tri-helical
e3ohdT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3ohdL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ohdH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol