Domain ID e3oi551

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 000403710
Type: Automatic domain
Parent: e2j0151
Range: 5:2-60
Ligands: MG TEL
PDB: 3oi5
PDB Description:
Species:

Structure of domain e3oi551

Domains in the same chain:

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e3oi551 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e3oi501 0:1-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3oi511 1:8-96 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3oi521 2:12-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3oi531 3:1-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3oi541 4:1-32 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3oi551 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3oi561 6:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3oi571 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3oi581 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3oi5D1 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3oi5D2 D:127-273 SH3 SH3 SH3
e3oi5F1 F:1-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3oi5G1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3oi5H1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3oi5H2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3oi5I2 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3oi5I1 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3oi5N1 N:1-139 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3oi5O1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3oi5R1 R:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3oi5U1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3oi5V1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3oi5W1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3oi5X1 X:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3oi5Y1 Y:2-102 SH3 SH3 SH3
e3oi5Z1 Z:3-93 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3oi5Z2 Z:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e3oi551 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3oi5W1 5:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e3oi5R1 5:x,y,z->R:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e3oi5U1 5:x,y,z->U:X,Y,Z Ribosomal protein L20 Interaction Interface Pymol