Domain ID e3otoJ1

Download files:
  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Ribosomal protein S10
  • T: Ribosomal protein S10
  • F: Ribosomal_S10
UID: 000401776
Type: Automatic domain
Parent: e2uubJ1
Range: J:3-100
Ligands: MG
PDB: 3oto
PDB Description: 30S RIBOSOMAL PROTEIN S10
UniProt: P80375
Hsap BLAST neighbor: P60866
Species:

Structure of domain e3otoJ1

Domains in the same chain:

Download Pymol

e3otoJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10

Domains in the same PDB:

e3otoB1 B:6-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e3otoC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3otoC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3otoD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3otoE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3otoE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3otoF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3otoG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3otoH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3otoH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3otoI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3otoJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3otoK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3otoL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3otoM1 M:2-116 HhH/H2TH H2TH H2TH
e3otoN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3otoO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3otoP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3otoQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3otoR1 R:16-88 HTH HTH tri-helical
e3otoS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e3otoT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3otoJ1 of H-group "Ribosomal protein S10":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3otoN1 J:X,Y,Z->N:x,y,z LIM domain-like Interaction Interface Pymol
e3otoC2 J:x,y,z->C:X,Y,Z KH-domains Interaction Interface Pymol
e3otoJ1 J:x,y,z->J:-Y+1,-X+1,-Z+1/2 Ribosomal protein S10 Interaction Interface Pymol
e3otoJ1 J:-Y+1,-X+1,-Z+1/2->J:x,y,z Ribosomal protein S10 Interaction Interface Pymol
e3otoI1 J:x,y,z->I:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol