ECOD: domain e3p1yC2

Domain ID e3p1yC2

A: a/b three-layered sandwiches
X: Restriction endonuclease-like
H: tRNA-intron endonuclease catalytic domain-like
T: tRNA-intron endonuclease catalytic domain-like
F: tRNA_int_endo

UID:	001394520
Type:	Automatic domain
Parent:	e1a79A2
Range:	C:225-315
PDB:	3p1y
PDB Description:	tRNA-splicing endonuclease
UniProt:	O29362
Species:	Archaeoglobus fulgidus

Domains in the same chain:

Download Pymol

e3p1yC3	C:2-60	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yC1	C:61-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yC4	C:140-224	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yC2	C:225-315	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

Structural contacts of domain e3p1yC2 of H-group "tRNA-intron endonuclease catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3p1yD1	C:X,Y,Z->D:x,y,z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e3p1yD4	C:X,Y,Z->D:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e3p1yD5	C:X,Y,Z->D:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e3p1yA1	C:-X-1,Y-1/2,-Z-1/2->A:x,y,z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e3p1yB3	C:x,y,z->B:X,Y,Z	tRNA-intron endonuclease N-terminal domain-like	Interaction Interface Pymol
e3p1yB1	C:x,y,z->B:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol
e3p1yB2	C:x,y,z->B:X,Y,Z	tRNA-intron endonuclease catalytic domain-like	Interaction Interface Pymol

e3p1yA3	A:2-60	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yA1	A:61-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yA4	A:140-224	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yA2	A:225-315	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yB3	B:2-60	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yB1	B:61-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yB4	B:140-224	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yB2	B:225-315	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yC3	C:2-60	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yC1	C:61-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yC4	C:140-224	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yC2	C:225-315	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yD6	D:2-60	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yD5	D:61-139	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like
e3p1yD1	D:140-224	Homing endonucleases-like	tRNA-intron endonuclease N-terminal domain-like	tRNA-intron endonuclease N-terminal domain-like
e3p1yD4	D:225-315	Restriction endonuclease-like	tRNA-intron endonuclease catalytic domain-like	tRNA-intron endonuclease catalytic domain-like