Domain ID e3p1yD1

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  • A: a+b two layers
  • X: Homing endonucleases-like
  • H: tRNA-intron endonuclease N-terminal domain-like
  • T: tRNA-intron endonuclease N-terminal domain-like
  • F: tRNA_int_endo_N
UID: 000426053
Type: Automatic domain
Parent: e1r0vA1
Range: D:140-224
PDB: 3p1y
PDB Description: tRNA-splicing endonuclease
UniProt: O29362
Species: Archaeoglobus fulgidus

Structure of domain e3p1yD1

Domains in the same chain:

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e3p1yD6 D:2-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yD5 D:61-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yD1 D:140-224 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yD4 D:225-315 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e3p1yA3 A:2-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yA1 A:61-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yA4 A:140-224 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yA2 A:225-315 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yB3 B:2-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yB1 B:61-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yB4 B:140-224 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yB2 B:225-315 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yC3 C:2-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yC1 C:61-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yC4 C:140-224 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yC2 C:225-315 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yD6 D:2-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yD5 D:61-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e3p1yD1 D:140-224 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e3p1yD4 D:225-315 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e3p1yD1 of H-group "tRNA-intron endonuclease N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3p1yC1 D:x,y,z->C:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1yC2 D:x,y,z->C:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1yC3 D:x,y,z->C:X,Y,Z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol
e3p1yB1 D:x,y,z->B:-X-1,Y-1/2,-Z-1/2 tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1yA2 D:x,y,z->A:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e3p1yA4 D:x,y,z->A:X-1,Y,Z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol