Domain ID e3pd5B1

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  • A: a/b three-layered sandwiches
  • X: DTD-like
  • H: DTD-like (Pfam 02580)
  • T: DTD-like (Pfam 02580)
  • F: tRNA-Thr_ED
UID: 000407443
Type: Automatic domain
Parent: e3pd2A1
Range: B:1-147
Ligands: GOL TSB
PDB: 3pd5
PDB Description: THREONYL-TRNA SYNTHETASE
UniProt: Q9UZ14
Species: Pyrococcus abyssi

Structure of domain e3pd5B1

Structural contacts of domain e3pd5B1 of H-group "DTD-like (Pfam 02580)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pd5A1 B:x,y,z->A:X,Y,Z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5A1 B:-X+1/2,-Y,Z-1/2->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5A1 B:-X+3/2,-Y,Z-1/2->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5A1 B:X-1/2,-Y+1/2,-Z->A:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5A1 B:x,y,z->A:X-1/2,-Y+1/2,-Z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5B1 B:x,y,z->B:-X+1,Y-1/2,-Z+1/2 DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5B1 B:-X+1,Y-1/2,-Z+1/2->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5B1 B:x,y,z->B:X-1,Y,Z DTD-like (Pfam 02580) Interaction Interface Pymol
e3pd5B1 B:X-1,Y,Z->B:x,y,z DTD-like (Pfam 02580) Interaction Interface Pymol