Domain ID e3pfdD3

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  • A: alpha bundles
  • X: Bromodomain-like
  • H: Acyl-CoA dehydrogenase C-terminal domain-like
  • T: Acyl-CoA dehydrogenase C-terminal domain-like
  • F: Acyl-CoA_dh_1
UID: 000405139
Type: Automatic domain
Parent: e1ivhA3
Range: D:238-389
Ligands: FDA IOD
PDB: 3pfd
PDB Description: Acyl-CoA dehydrogenase
UniProt: E7FH79
Hsap BLAST neighbor: P11310
Species: Mycobacterium thermoresistibile

Structure of domain e3pfdD3

Domains in the same chain:

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e3pfdD2 D:18-127 Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like
e3pfdD1 D:128-238 Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like
e3pfdD3 D:238-389 Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like

Domains in the same PDB:

e3pfdA3 A:18-127 Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like
e3pfdA2 A:128-238 Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like
e3pfdA1 A:238-389 Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like
e3pfdB2 B:18-127 Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like
e3pfdB1 B:128-238 Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like
e3pfdB3 B:238-389 Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like
e3pfdC2 C:19-127 Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like
e3pfdC1 C:128-238 Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like
e3pfdC3 C:238-389 Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like
e3pfdD2 D:18-127 Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like Acyl-CoA dehydrogenase N-terminal domain-like
e3pfdD1 D:128-238 Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like Acyl-CoA dehydrogenase middle domain-like
e3pfdD3 D:238-389 Bromodomain-like Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like

Structural contacts of domain e3pfdD3 of H-group "Acyl-CoA dehydrogenase C-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pfdC1 D:x,y,z->C:X,Y,Z Acyl-CoA dehydrogenase middle domain-like Interaction Interface Pymol
e3pfdC3 D:x,y,z->C:X,Y,Z Acyl-CoA dehydrogenase C-terminal domain-like Interaction Interface Pymol
e3pfdA1 D:x,y,z->A:X,Y,Z Acyl-CoA dehydrogenase C-terminal domain-like Interaction Interface Pymol
e3pfdA2 D:x,y,z->A:-X+1,Y-1/2,-Z+1 Acyl-CoA dehydrogenase middle domain-like Interaction Interface Pymol
e3pfdA3 D:x,y,z->A:-X+1,Y-1/2,-Z+1 Acyl-CoA dehydrogenase N-terminal domain-like Interaction Interface Pymol
e3pfdD1 D:-X+2,Y-1/2,-Z+1->D:x,y,z Acyl-CoA dehydrogenase middle domain-like Interaction Interface Pymol
e3pfdB3 D:x,y,z->B:X,Y,Z Acyl-CoA dehydrogenase C-terminal domain-like Interaction Interface Pymol