Domain ID e3pifB3

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  • A: beta barrels
  • X: SH3
  • H: SH3
  • T: SH3
  • F: XRN1_D2_D3
UID: 001761677
Type: Automatic domain
Parent: e3pieA5
Range: B:915-1155
PDB: 3pif
PDB Description: 5'->3' EXORIBONUCLEASE (xrn1)
UniProt: Q6CJ09
Species: Kluyveromyces lactis

Structure of domain e3pifB3

Domains in the same chain:

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e3pifB6 B:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pifB7 B:250-380,B:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pifB1 B:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pifB8 B:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pifB2 B:721-914 SH3 SH3 SH3
e3pifB3 B:915-1155 SH3 SH3 SH3
e3pifB4 B:1156-1240 SH3 SH3 SH3

Domains in the same PDB:

e3pifA5 A:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pifA7 A:250-380,A:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pifA2 A:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pifA8 A:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pifA6 A:721-914 SH3 SH3 SH3
e3pifA3 A:915-1155 SH3 SH3 SH3
e3pifA4 A:1156-1240 SH3 SH3 SH3
e3pifB6 B:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pifB7 B:250-380,B:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pifB1 B:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pifB8 B:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pifB2 B:721-914 SH3 SH3 SH3
e3pifB3 B:915-1155 SH3 SH3 SH3
e3pifB4 B:1156-1240 SH3 SH3 SH3
e3pifC5 C:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pifC8 C:250-380,C:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pifC3 C:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pifC9 C:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pifC7 C:721-914 SH3 SH3 SH3
e3pifC6 C:915-1155 SH3 SH3 SH3
e3pifC2 C:1156-1240 SH3 SH3 SH3
e3pifD1 D:3-249 HAD domain-like HAD domain-related PIN domain-like
e3pifD7 D:250-380,D:504-673 Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases Helical domain in 5'->3' exoribonucleases
e3pifD6 D:381-462 R3H domain-like R3H-like domain in 5'->3' exoribonucleases R3H-like domain in 5'->3' exoribonucleases
e3pifD8 D:674-720 C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases C-terminal segment in 5'->3' exoribonucleases
e3pifD3 D:721-914 SH3 SH3 SH3
e3pifD4 D:915-981,D:1106-1155 SH3 SH3 SH3
e3pifD5 D:1156-1240 SH3 SH3 SH3

Structural contacts of domain e3pifB3 of H-group "SH3":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pifD6 B:X,Y,Z->D:x,y,z R3H-like domain in 5'->3' exoribonucleases Interaction Interface Pymol
e3pifD4 B:X,Y-1,Z->D:x,y,z SH3 Interaction Interface Pymol