Domain ID e3pioD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000142475
Type: Automatic domain
Parent: e1iq4A1
Range: D:3-179
PDB: 3pio
PDB Description: 50S ribosomal protein L5
UniProt: Q9RXJ0
Hsap BLAST neighbor: P62913
Species: Deinococcus radiodurans

Structure of domain e3pioD1

Domains in the same chain:

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e3pioD1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e3pio11 1:2-54 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pio21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3pio31 3:6-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3pio41 4:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3pioA2 A:21-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3pioA1 A:129-273 SH3 SH3 SH3
e3pioB1 B:1-205 cradle loop barrel RIFT-related Alanine racemase-C
e3pioC1 C:2-195 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3pioD1 D:3-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3pioE1 E:5-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pioE2 E:83-175 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pioF1 F:74-136 HTH HTH Ribosomal protein L11, C-terminal domain
e3pioG1 G:30-171 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3pioH1 H:1-134 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3pioI1 I:11-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3pioJ1 J:6-141 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3pioK1 K:3-115 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3pioL1 L:8-111 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pioM1 M:2-109 SH3 SH3 SH3
e3pioN1 N:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3pioO1 O:5-98 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3pioP1 P:8-133 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3pioQ1 Q:2-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3pioR1 R:4-113 SH3 SH3 SH3
e3pioS1 S:1-88 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3pioS2 S:89-175 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3pioT1 T:12-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3pioU1 U:8-79 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3pioV1 V:2-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3pioW1 W:1-55 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3pioZ1 Z:3-59 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e3pioD1 of H-group "Ribosomal protein L5":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pioC1 D:X-1,Y,Z->C:x,y,z Ribosomal protein L4 Interaction Interface Pymol