ECOD: domain e3po3A4

Domain ID e3po3A4

A: a+b complex topology
X: N-terminal domain in RNA-polymerase beta-prime subunit
H: N-terminal domain in RNA-polymerase beta-prime subunit
T: N-terminal domain in RNA-polymerase beta-prime subunit
F: RNA_pol_Rpb1_1

UID:	001387523
Type:	Automatic domain
Parent:	e1twfA4
Range:	A:2-336
Ligands:	ACT EPE ZN
PDB:	3po3
PDB Description:	DNA-directed RNA polymerase II subunit RPB1
UniProt:	P04050
Hsap BLAST neighbor:	P24928
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e3po3A4	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e3po3A5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e3po3A2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e3po3A9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e3po3A3	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e3po3A7	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e3po3A1	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e3po3A6	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e3po3A8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

Structural contacts of domain e3po3A4 of H-group "N-terminal domain in RNA-polymerase beta-prime subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3po3B5	A:X,Y,Z->B:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e3po3B2	A:X,Y,Z->B:x,y,z	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e3po3B6	A:X,Y,Z->B:x,y,z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e3po3D1	A:-X+1,Y,-Z-1/2->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e3po3D1	A:X,Y,Z->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol