Domain ID e3pufB1

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  • A: beta complex topology
  • X: triple barrel
  • H: triple barrel
  • T: RNase H2 subunits B and C
  • F: Ydr279_N
UID: 001141947
Type: Manual and representative domain
Range: B:13-92
PDB: 3puf
PDB Description: RIBONUCLEASE H2 SUBUNIT B
In assembly with: e3pufC1
UniProt: Q5TBB1
Hsap BLAST neighbor: Q5TBB1
Species: Homo sapiens

Structure of domain e3pufB1 in assembly with e3pufC1

Domains in the same chain:

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e3pufB1 B:13-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufB2 B:93-231 HTH HTH winged

Domains in the same PDB:

e3pufA1 A:1-257,A:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufB1 B:13-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufB2 B:93-231 HTH HTH winged
e3pufC1 C:8-162 triple barrel triple barrel RNase H2 subunits B and C
e3pufD1 D:2-259,D:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufE1 E:13-82 triple barrel triple barrel RNase H2 subunits B and C
e3pufE2 E:83-183,E:204-228 HTH HTH winged
e3pufF1 F:8-88,F:117-162 triple barrel triple barrel RNase H2 subunits B and C
e3pufG2 G:9-258,G:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufH3 H:12-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufH1 H:93-232 HTH HTH winged
e3pufI1 I:7-162 triple barrel triple barrel RNase H2 subunits B and C
e3pufJ1 J:3-259,J:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufK1 K:12-82 triple barrel triple barrel RNase H2 subunits B and C
e3pufK2 K:83-184,K:207-232 HTH HTH winged
e3pufL1 L:10-87,L:120-161 triple barrel triple barrel RNase H2 subunits B and C
e3pufM1 M:2-257,M:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufN2 N:13-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufN3 N:93-230 HTH HTH winged
e3pufO1 O:9-86,O:118-163 triple barrel triple barrel RNase H2 subunits B and C
e3pufP1 P:5-257,P:285-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufQ2 Q:13-82 triple barrel triple barrel RNase H2 subunits B and C
e3pufQ3 Q:83-185,Q:209-232 HTH HTH winged
e3pufR1 R:10-86,R:118-161 triple barrel triple barrel RNase H2 subunits B and C

Structural contacts of domain e3pufB1 of H-group "triple barrel":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pufC1 B:X,Y,Z->C:x,y,z triple barrel Interaction Interface Pymol
e3pufA1 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol