Domain ID e3pufD1

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: RNase_HII
UID: 000408883
Type: Automatic domain
Parent: e1ekeA1
Range: D:2-259,D:284-299
PDB: 3puf
PDB Description: RIBONUCLEASE H2 SUBUNIT A
UniProt: O75792
Hsap BLAST neighbor: O75792
Species: Homo sapiens

Structure of domain e3pufD1

Domains in the same chain:

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e3pufD1 D:2-259,D:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3pufA1 A:1-257,A:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufB1 B:13-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufB2 B:93-231 HTH HTH winged
e3pufC1 C:8-162 triple barrel triple barrel RNase H2 subunits B and C
e3pufD1 D:2-259,D:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufE1 E:13-82 triple barrel triple barrel RNase H2 subunits B and C
e3pufE2 E:83-183,E:204-228 HTH HTH winged
e3pufF1 F:8-88,F:117-162 triple barrel triple barrel RNase H2 subunits B and C
e3pufG2 G:9-258,G:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufH3 H:12-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufH1 H:93-232 HTH HTH winged
e3pufI1 I:7-162 triple barrel triple barrel RNase H2 subunits B and C
e3pufJ1 J:3-259,J:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufK1 K:12-82 triple barrel triple barrel RNase H2 subunits B and C
e3pufK2 K:83-184,K:207-232 HTH HTH winged
e3pufL1 L:10-87,L:120-161 triple barrel triple barrel RNase H2 subunits B and C
e3pufM1 M:2-257,M:284-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufN2 N:13-92 triple barrel triple barrel RNase H2 subunits B and C
e3pufN3 N:93-230 HTH HTH winged
e3pufO1 O:9-86,O:118-163 triple barrel triple barrel RNase H2 subunits B and C
e3pufP1 P:5-257,P:285-299 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pufQ2 Q:13-82 triple barrel triple barrel RNase H2 subunits B and C
e3pufQ3 Q:83-185,Q:209-232 HTH HTH winged
e3pufR1 R:10-86,R:118-161 triple barrel triple barrel RNase H2 subunits B and C

Structural contacts of domain e3pufD1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pufF1 D:X,Y,Z->F:x,y,z triple barrel Interaction Interface Pymol
e3pufE2 D:X,Y,Z->E:x,y,z HTH Interaction Interface Pymol
e3pufE1 D:X,Y,Z->E:x,y,z triple barrel Interaction Interface Pymol
e3pufG2 D:X-1,Y,Z->G:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3pufM1 D:X-1,Y,Z->M:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3pufR1 D:X,Y,Z->R:x,y,z triple barrel Interaction Interface Pymol
e3pufI1 D:X,Y,Z->I:x,y,z triple barrel Interaction Interface Pymol
e3pufB2 D:x,y,z->B:X,Y-1,Z HTH Interaction Interface Pymol
e3pufP1 D:X,Y,Z->P:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3pufN2 D:X,Y,Z->N:x,y,z triple barrel Interaction Interface Pymol
e3pufH3 D:X,Y,Z->H:x,y,z triple barrel Interaction Interface Pymol