ECOD: domain e3pufD1

Domain ID e3pufD1

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: RNase_HII

UID:	000408883
Type:	Automatic domain
Parent:	e1ekeA1
Range:	D:2-259,D:284-299
PDB:	3puf
PDB Description:	RIBONUCLEASE H2 SUBUNIT A
UniProt:	O75792
Hsap BLAST neighbor:	O75792
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e3pufD1	D:2-259,D:284-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e3pufA1	A:1-257,A:284-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3pufB1	B:13-92	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufB2	B:93-231	HTH	HTH	winged
e3pufC1	C:8-162	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufD1	D:2-259,D:284-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3pufE1	E:13-82	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufE2	E:83-183,E:204-228	HTH	HTH	winged
e3pufF1	F:8-88,F:117-162	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufG2	G:9-258,G:284-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3pufH3	H:12-92	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufH1	H:93-232	HTH	HTH	winged
e3pufI1	I:7-162	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufJ1	J:3-259,J:284-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3pufK1	K:12-82	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufK2	K:83-184,K:207-232	HTH	HTH	winged
e3pufL1	L:10-87,L:120-161	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufM1	M:2-257,M:284-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3pufN2	N:13-92	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufN3	N:93-230	HTH	HTH	winged
e3pufO1	O:9-86,O:118-163	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufP1	P:5-257,P:285-299	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3pufQ2	Q:13-82	triple barrel	triple barrel	RNase H2 subunits B and C
e3pufQ3	Q:83-185,Q:209-232	HTH	HTH	winged
e3pufR1	R:10-86,R:118-161	triple barrel	triple barrel	RNase H2 subunits B and C

Structural contacts of domain e3pufD1 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3pufF1	D:X,Y,Z->F:x,y,z	triple barrel	Interaction Interface Pymol
e3pufE2	D:X,Y,Z->E:x,y,z	HTH	Interaction Interface Pymol
e3pufE1	D:X,Y,Z->E:x,y,z	triple barrel	Interaction Interface Pymol
e3pufG2	D:X-1,Y,Z->G:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3pufM1	D:X-1,Y,Z->M:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3pufR1	D:X,Y,Z->R:x,y,z	triple barrel	Interaction Interface Pymol
e3pufI1	D:X,Y,Z->I:x,y,z	triple barrel	Interaction Interface Pymol
e3pufB2	D:x,y,z->B:X,Y-1,Z	HTH	Interaction Interface Pymol
e3pufP1	D:X,Y,Z->P:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3pufN2	D:X,Y,Z->N:x,y,z	triple barrel	Interaction Interface Pymol
e3pufH3	D:X,Y,Z->H:x,y,z	triple barrel	Interaction Interface Pymol