Domain ID e3pv8A3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 000144968
Type: Automatic domain
Parent: e2hhvA3
Range: A:643-667,A:792-876
Ligands: D3T MG
PDB: 3pv8
PDB Description: DNA polymerase I
UniProt: Q5KWC1
Hsap BLAST neighbor: O75417
Species: Geobacillus kaustophilus

Structure of domain e3pv8A3

Domains in the same chain:

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e3pv8A4 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pv8A2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3pv8A3 A:643-667,A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3pv8A1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3pv8A4 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pv8A2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3pv8A3 A:643-667,A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3pv8A1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3pv8D4 D:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3pv8D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3pv8D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3pv8D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3pv8A3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pv8D2 A:X-1/2,-Y-1/2,-Z->D:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3pv8D3 A:X-1/2,-Y-1/2,-Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3pv8A1 A:x,y,z->A:-X+3,Y-1/2,-Z+1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol