Domain ID e3px6D3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_A
UID: 000431616
Type: Automatic domain
Parent: e2hhvA3
Range: D:643-667,D:792-876
Ligands: DCT MN SO4
PDB: 3px6
PDB Description: DNA polymerase I
UniProt: Q5KWC1
Hsap BLAST neighbor: O75417
Species: Geobacillus kaustophilus

Structure of domain e3px6D3

Domains in the same chain:

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e3px6D4 D:296-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3px6D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3px6D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3px6D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3px6A4 A:298-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3px6A2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3px6A3 A:643-667,A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3px6A1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3px6D4 D:296-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3px6D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3px6D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3px6D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3px6D3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3px6D1 D:x,y,z->D:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3px6D4 D:x,y,z->D:X-1/2,-Y-1/2,-Z Ribonuclease H-like Interaction Interface Pymol
e3px6A1 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3px6A3 D:x,y,z->A:X-1/2,-Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3px6A1 D:x,y,z->A:X-1/2,-Y-1/2,-Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol