Domain ID e3pyoJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000412382
Type: Automatic domain
Parent: e4v19N1
Range: J:25-161
Ligands: MG
PDB: 3pyo
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e3pyoJ1

Domains in the same chain:

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e3pyoJ1 J:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e3pyo11 1:36-65 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3pyo21 2:2-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pyo31 3:9-52 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pyo41 4:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3pyo51 5:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3pyoC1 C:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3pyoC2 C:127-272 SH3 SH3 SH3
e3pyoE1 E:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3pyoF1 F:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3pyoG1 G:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pyoG2 G:83-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pyoH2 H:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3pyoH1 H:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3pyoJ1 J:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3pyoK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3pyoN1 N:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3pyoQ1 Q:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3pyoR1 R:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3pyoS1 S:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3pyoT1 T:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3pyoU1 U:2-101 SH3 SH3 SH3
e3pyoV1 V:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3pyoV2 V:93-190 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3pyoW1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3pyoX1 X:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3pyoY1 Y:1-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3pyoZ1 Z:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3pyoJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pyoQ1 J:X,Y,Z->Q:x,y,z Ribosomal protein L20 Interaction Interface Pymol
e3pyoQ1 J:x,y,z->D:X,Y,Z Ribosomal protein L20 Interaction Interface Pymol