Domain ID e3pytX1

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  • A: few secondary structure elements
  • X: Ribosomal protein bL28-related
  • H: Ribosomal protein bL28-related
  • T: Ribosomal protein L28
  • F: Unmapped domains
UID: 000412505
Type: Automatic domain
Parent: e2j0111
Range: X:8-95
Ligands: MG
PDB: 3pyt
PDB Description:
Species:

Structure of domain e3pytX1

Domains in the same chain:

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e3pytX1 X:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Domains in the same PDB:

e3pyt11 1:36-65 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3pyt21 2:2-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pyt31 3:9-52 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pyt41 4:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3pyt51 5:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3pytC1 C:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3pytC2 C:127-272 SH3 SH3 SH3
e3pytE1 E:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3pytF1 F:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3pytG1 G:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pytG2 G:83-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pytH2 H:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3pytH1 H:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3pytJ1 J:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3pytK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3pytN1 N:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3pytQ1 Q:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3pytR1 R:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3pytS1 S:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3pytT1 T:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3pytU1 U:2-101 SH3 SH3 SH3
e3pytV1 V:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3pytV2 V:93-190 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3pytW1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3pytX1 X:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3pytY1 Y:1-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3pytZ1 Z:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3pytX1 of H-group "Ribosomal protein bL28-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3pytH2 X:x,y,z->H:X,Y,Z L9 N-domain-like Interaction Interface Pymol