Domain ID e3pyvW1

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Ribosomal L27 protein
  • F: Ribosomal_L27
UID: 000412558
Type: Automatic domain
Parent: e3j6bR1
Range: W:10-85
PDB: 3pyv
PDB Description:
Hsap BLAST neighbor: Q9P0M9
Species:

Structure of domain e3pyvW1

Domains in the same chain:

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e3pyvW1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein

Domains in the same PDB:

e3pyv11 1:36-65 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3pyv21 2:2-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pyv31 3:9-52 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3pyv41 4:1-48 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3pyv51 5:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3pyvC1 C:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3pyvC2 C:127-272 SH3 SH3 SH3
e3pyvE1 E:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3pyvF1 F:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3pyvG1 G:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pyvG2 G:83-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3pyvH2 H:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3pyvH1 H:54-145 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e3pyvJ1 J:25-161 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3pyvK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3pyvN1 N:2-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3pyvQ1 Q:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3pyvR1 R:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3pyvS1 S:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3pyvT1 T:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3pyvU1 U:2-101 SH3 SH3 SH3
e3pyvV1 V:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3pyvV2 V:93-190 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e3pyvW1 W:10-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3pyvX1 X:8-95 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3pyvY1 Y:1-62 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3pyvZ1 Z:1-59 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3pyvW1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j6bR1 W:x,y,z->O:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3j6bR1 W:x,y,z->M:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol