Domain ID e3q22A5

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: vRNAP_dom
UID: 000413025
Type: Automatic domain
Parent: e2po4A5
Range: A:551-597,A:918-1100
Ligands: GTP MG
PDB: 3q22
PDB Description: Virion RNA polymerase
UniProt: Q859P9
Species: Escherichia phage N4

Structure of domain e3q22A5

Domains in the same chain:

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e3q22A4 A:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3q22A3 A:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e3q22A5 A:551-597,A:918-1100 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3q22A1 A:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3q22A4 A:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3q22A3 A:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e3q22A5 A:551-597,A:918-1100 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3q22A1 A:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3q22B4 B:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3q22B3 B:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e3q22B5 B:551-597,B:918-1098 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3q22B1 B:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3q22A5 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3q22B5 A:x,y,z->B:X-1,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3q22B3 A:x,y,z->B:X-1,Y,Z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3q22B3 A:x,y,z->B:X-1/2,-Y-3/2,-Z+2 inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3q22B3 A:x,y,z->A:X-1/2,-Y-3/2,-Z+2 inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3q22B5 A:x,y,z->B:X-1,Y+1,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3q22A3 A:-X,Y-1/2,-Z+3/2->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e3q22A1 A:x,y,z->A:X-1,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol