| UID: | 000411889 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1jmaB2 |
| Range: | S:77-120 |
| PDB: | 3qd6 |
| PDB Description: | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5 |
| UniProt: | P25942 |
| Hsap BLAST neighbor: | P25942 |
| Species: | Homo sapiens |
Structure of domain e3qd6S2
Domains in the same chain:
| e3qd6S1 | S:21-76 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6S2 | S:77-120 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6S3 | S:121-145 | EGF-like | EGF-related | TNF receptor-like |
Domains in the same PDB:
| e3qd6A1 | A:119-261 | jelly-roll | TNF-like | TNF-like |
| e3qd6B1 | B:119-261 | jelly-roll | TNF-like | TNF-like |
| e3qd6C1 | C:119-261 | jelly-roll | TNF-like | TNF-like |
| e3qd6D1 | D:119-261 | jelly-roll | TNF-like | TNF-like |
| e3qd6E1 | E:119-261 | jelly-roll | TNF-like | TNF-like |
| e3qd6F1 | F:119-261 | jelly-roll | TNF-like | TNF-like |
| e3qd6R1 | R:26-76 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6R2 | R:77-120 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6R3 | R:121-145 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6S1 | S:21-76 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6S2 | S:77-120 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6S3 | S:121-145 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6T1 | T:26-76 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6T2 | T:77-120 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6T3 | T:121-145 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6U1 | U:21-76 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6U2 | U:77-120 | EGF-like | EGF-related | TNF receptor-like |
| e3qd6U3 | U:121-145 | EGF-like | EGF-related | TNF receptor-like |
Structural contacts of domain e3qd6S2 of H-group "EGF-related":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3qd6C1 | S:x,y,z->C:X,Y,Z | TNF-like | Interaction Interface Pymol |
| e3qd6A1 | S:X-Y+1,X+1,Z-1/6->A:x,y,z | TNF-like | Interaction Interface Pymol |
| e3qd6A1 | S:x,y,z->A:X,Y,Z | TNF-like | Interaction Interface Pymol |
