ECOD: domain e3qd6R3

Domain ID e3qd6R3

A: few secondary structure elements
X: EGF-like
H: EGF-related
T: TNF receptor-like
F: Unmapped domains

UID:	000179792
Type:	Automatic domain
Parent:	e3me2R1
Range:	R:121-145
PDB:	3qd6
PDB Description:	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5
UniProt:	P25942
Hsap BLAST neighbor:	P25942
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3qd6R3

Domains in the same chain:

Download Pymol

e3qd6R1	R:26-76	EGF-like	EGF-related	TNF receptor-like
e3qd6R2	R:77-120	EGF-like	EGF-related	TNF receptor-like
e3qd6R3	R:121-145	EGF-like	EGF-related	TNF receptor-like

Domains in the same PDB:

e3qd6A1	A:119-261	jelly-roll	TNF-like	TNF-like
e3qd6B1	B:119-261	jelly-roll	TNF-like	TNF-like
e3qd6C1	C:119-261	jelly-roll	TNF-like	TNF-like
e3qd6D1	D:119-261	jelly-roll	TNF-like	TNF-like
e3qd6E1	E:119-261	jelly-roll	TNF-like	TNF-like
e3qd6F1	F:119-261	jelly-roll	TNF-like	TNF-like
e3qd6R1	R:26-76	EGF-like	EGF-related	TNF receptor-like
e3qd6R2	R:77-120	EGF-like	EGF-related	TNF receptor-like
e3qd6R3	R:121-145	EGF-like	EGF-related	TNF receptor-like
e3qd6S1	S:21-76	EGF-like	EGF-related	TNF receptor-like
e3qd6S2	S:77-120	EGF-like	EGF-related	TNF receptor-like
e3qd6S3	S:121-145	EGF-like	EGF-related	TNF receptor-like
e3qd6T1	T:26-76	EGF-like	EGF-related	TNF receptor-like
e3qd6T2	T:77-120	EGF-like	EGF-related	TNF receptor-like
e3qd6T3	T:121-145	EGF-like	EGF-related	TNF receptor-like
e3qd6U1	U:21-76	EGF-like	EGF-related	TNF receptor-like
e3qd6U2	U:77-120	EGF-like	EGF-related	TNF receptor-like
e3qd6U3	U:121-145	EGF-like	EGF-related	TNF receptor-like

Structural contacts of domain e3qd6R3 of H-group "EGF-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3qd6T1	R:X-Y,X,Z-1/6->T:x,y,z	EGF-related	Interaction Interface Pymol