Domain ID e3rfzB1

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  • A: beta barrels
  • X: FimD N-terminal domain-like
  • H: FimD N-terminal domain-like
  • T: FimD N-terminal domain-like
  • F: PapC_N
UID: 000996705
Type: Automatic domain
Parent: e3bwuD1
Range: B:26-122
Ligands: SO4
PDB: 3rfz
PDB Description: OUTER MEMBRANE USHER PROTEIN, TYPE 1 FIMBRIAL SYNTHESIS
UniProt: P30130
Species: Escherichia coli

Structure of domain e3rfzB1

Domains in the same chain:

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e3rfzB1 B:26-122 FimD N-terminal domain-like FimD N-terminal domain-like FimD N-terminal domain-like
e3rfzB3 B:123-237,B:312-453,B:474-659 Outer membrane meander beta-barrels Usher PapC translocation pore Usher PapC translocation pore
e3rfzB2 B:238-311 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rfzB5 B:660-741 Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like
e3rfzB4 B:742-834 Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like

Domains in the same PDB:

e3rfzA1 A:1-158 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3rfzA2 A:159-279 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3rfzB1 B:26-122 FimD N-terminal domain-like FimD N-terminal domain-like FimD N-terminal domain-like
e3rfzB3 B:123-237,B:312-453,B:474-659 Outer membrane meander beta-barrels Usher PapC translocation pore Usher PapC translocation pore
e3rfzB2 B:238-311 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rfzB5 B:660-741 Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like
e3rfzB4 B:742-834 Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like
e3rfzC2 C:1-119 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rfzC1 C:120-205 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rfzD1 D:1-158 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3rfzD2 D:159-279 Immunoglobulin-like beta-sandwich Immunoglobulin-related Common fold of diphtheria toxin/transcription factors/cytochrome f
e3rfzE2 E:26-122 FimD N-terminal domain-like FimD N-terminal domain-like FimD N-terminal domain-like
e3rfzE3 E:123-237,E:312-453,E:474-659 Outer membrane meander beta-barrels Usher PapC translocation pore Usher PapC translocation pore
e3rfzE1 E:238-311 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rfzE5 E:660-741 Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like
e3rfzE4 E:742-834 Immunoglobulin-like beta-sandwich Immunoglobulin-related Prealbumin-like
e3rfzF2 F:1-119 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rfzF1 F:120-205 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3rfzB1 of H-group "FimD N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3rfzA2 B:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3rfzA2 B:-X,Y-1/2,-Z+1->A:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3rfzC2 B:-X,Y-1/2,-Z+1->C:x,y,z Immunoglobulin-related Interaction Interface Pymol