Domain ID e3rkdH2

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: V-set
UID: 000143492
Type: Automatic domain
Parent: e1mjuH1
Range: H:1-124
PDB: 3rkd
PDB Description: Monoclonal Antibody, Heavy Chain
Hsap BLAST neighbor: P01817
Species: Mus musculus

Structure of domain e3rkdH2

Domains in the same chain:

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e3rkdH2 H:1-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdH1 H:125-224 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e3rkdA1 A:459-604 cradle loop barrel RIFT-related Phage tail proteins
e3rkdB1 B:460-604 cradle loop barrel RIFT-related Phage tail proteins
e3rkdC1 C:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdC2 C:108-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdD1 D:1-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdD2 D:125-224 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdH2 H:1-124 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdH1 H:125-224 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3rkdL2 L:108-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3rkdH2 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3rkdL1 H:x,y,z->L:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3rkdA1 H:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e3rkdD1 H:x,y,z->D:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3rkdD2 H:x,y,z->D:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3rkdL1 H:x,y,z->L:-X,Y-1/2,-Z Immunoglobulin-related Interaction Interface Pymol
e3rkdC2 H:X-1,Y,Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol