Domain ID e3rvdD2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: NAD(P)-binding Rossmann-fold domains
  • F: Gp_dh_N
UID: 000972703
Type: Automatic domain
Parent: e2g82A2
Range: D:-1-148,D:313-333
Ligands: NAD
PDB: 3rvd
PDB Description: Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
UniProt: P25856
Hsap BLAST neighbor: P04406
Species: Arabidopsis thaliana

Structure of domain e3rvdD2

Domains in the same chain:

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e3rvdD2 D:-1-148,D:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdD1 D:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Domains in the same PDB:

e3rvdA2 A:0-148,A:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdA1 A:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdB2 B:-1-148,B:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdB1 B:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdC2 C:-1-148,C:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdC1 C:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdD2 D:-1-148,D:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdD1 D:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdE2 E:-1-148,E:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdE1 E:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdF2 F:-1-148,F:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdF1 F:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdG2 G:-1-148,G:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdG1 G:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdH2 H:-1-148,H:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdH1 H:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdO2 O:-1-148,O:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdO1 O:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
e3rvdQ2 Q:-1-148,Q:313-333 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e3rvdQ1 Q:149-312 FwdE/GAPDH domain-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

Structural contacts of domain e3rvdD2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3rvdA1 D:x,y,z->A:X,Y,Z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e3rvdH2 D:X,Y,Z->H:x,y,z Rossmann-related Interaction Interface Pymol
e3rvdC1 D:x,y,z->C:X,Y,Z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e3rvdD2 D:x,y,z->D:-X+1,Y,-Z+1 Rossmann-related Interaction Interface Pymol
e3rvdD1 D:x,y,z->D:-X+1,Y,-Z+1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e3rvdD1 D:-X+1,Y,-Z+1->D:x,y,z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e3rvdD2 D:-X+1,Y,-Z+1->D:x,y,z Rossmann-related Interaction Interface Pymol
e3rvdD1 D:x,y,z->D:X,-Y+1,-Z+1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol
e3rvdD1 D:X,-Y+1,-Z+1->D:x,y,z Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Interaction Interface Pymol