| UID: | 001518403 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2g50A2 |
| Range: | B:14-116,B:219-396 |
| Ligands: | GOL MG OXL |
| PDB: | 3srd |
| PDB Description: | Pyruvate kinase isozymes M1/M2 |
| UniProt: | P14618 |
| Hsap BLAST neighbor: | P14618 |
| Species: | Homo sapiens |
Structure of domain e3srdB2
Domains in the same chain:
| e3srdB2 | B:14-116,B:219-396 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3srdB1 | B:117-218 | cradle loop barrel | RIFT-related | PK beta-barrel domain-like |
| e3srdB3 | B:397-531 | PK C-terminal domain-like | PK C-terminal domain-like | PK C-terminal domain-like |
Domains in the same PDB:
| e3srdA1 | A:13-116,A:219-396 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3srdA3 | A:117-218 | cradle loop barrel | RIFT-related | PK beta-barrel domain-like |
| e3srdA2 | A:397-531 | PK C-terminal domain-like | PK C-terminal domain-like | PK C-terminal domain-like |
| e3srdB2 | B:14-116,B:219-396 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3srdB1 | B:117-218 | cradle loop barrel | RIFT-related | PK beta-barrel domain-like |
| e3srdB3 | B:397-531 | PK C-terminal domain-like | PK C-terminal domain-like | PK C-terminal domain-like |
| e3srdC1 | C:13-116,C:219-396 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3srdC2 | C:117-218 | cradle loop barrel | RIFT-related | PK beta-barrel domain-like |
| e3srdC3 | C:397-531 | PK C-terminal domain-like | PK C-terminal domain-like | PK C-terminal domain-like |
| e3srdD1 | D:15-116,D:219-396 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3srdD3 | D:117-218 | cradle loop barrel | RIFT-related | PK beta-barrel domain-like |
| e3srdD2 | D:397-531 | PK C-terminal domain-like | PK C-terminal domain-like | PK C-terminal domain-like |
Structural contacts of domain e3srdB2 of H-group "TIM barrels":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3srdD2 | B:X,Y,Z->D:x,y,z | PK C-terminal domain-like | Interaction Interface Pymol |
| e3srdD1 | B:X,Y,Z->D:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3srdD3 | B:X,Y,Z->D:x,y,z | RIFT-related | Interaction Interface Pymol |
| e3srdA2 | B:x,y,z->A:X,Y,Z | PK C-terminal domain-like | Interaction Interface Pymol |
| e3srdA1 | B:x,y,z->A:X,Y,Z | TIM barrels | Interaction Interface Pymol |
| e3srdD1 | B:-X-1,Y-1/2,-Z-1->D:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3srdD3 | B:-X-1,Y-1/2,-Z-1->D:x,y,z | RIFT-related | Interaction Interface Pymol |
| e3srdC1 | B:x,y,z->C:X-1,Y,Z-1 | TIM barrels | Interaction Interface Pymol |
| e3srdB2 | B:x,y,z->B:-X-1,Y-1/2,-Z-1 | TIM barrels | Interaction Interface Pymol |
| e3srdB2 | B:-X-1,Y-1/2,-Z-1->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3srdC1 | B:X,Y,Z->C:x,y,z | TIM barrels | Interaction Interface Pymol |
