ECOD: domain e3sv3A3

Domain ID e3sv3A3

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_A

UID:	000150473
Type:	Automatic domain
Parent:	e2hhvA3
Range:	A:592-615,A:740-832
Ligands:	5SI FMT MG
PDB:	3sv3
PDB Description:	DNA POLYMERASE I, THERMOSTABLE
UniProt:	P19821
Hsap BLAST neighbor:	Q7Z5Q5
Species:	Thermus aquaticus

Domain
In chain context
In PDB context

Structure of domain e3sv3A3

Domains in the same chain:

Download Pymol

e3sv3A4	A:293-422	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3sv3A2	A:423-591	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3sv3A3	A:592-615,A:740-832	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3sv3A1	A:616-739	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3sv3A4	A:293-422	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3sv3A2	A:423-591	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3sv3A3	A:592-615,A:740-832	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3sv3A1	A:616-739	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3sv3A3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3sv3A3	A:x,y,z->A:X-Y,-Y,-Z-1/3	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3sv3A2	A:x,y,z->A:X-Y,-Y,-Z-1/3	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3sv3A3	A:X-Y,-Y,-Z-1/3->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3sv3A2	A:X-Y,-Y,-Z-1/3->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3sv3A3	A:x,y,z->A:-X,-X+Y,-Z-2/3	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3sv3A1	A:x,y,z->A:-X,-X+Y,-Z-2/3	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e3sv3A1	A:-X,-X+Y,-Z-2/3->A:x,y,z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e3sv3A3	A:-X,-X+Y,-Z-2/3->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3sv3A2	A:x,y,z->A:-X,-X+Y,-Z+1/3	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3sv3A2	A:-X,-X+Y,-Z+1/3->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3sv3A4	A:-Y,X-Y-1,Z+1/3->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol