ECOD: domain e3t1bD2

Domain ID e3t1bD2

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: LysR_substrate

UID:	001812485
Type:	Automatic domain
Parent:	e3t1bA2
Range:	D:89-159,D:263-290
PDB:	3t1b
PDB Description:	Transcriptional regulator, LysR family
UniProt:	Q9KT56
Species:	Vibrio cholerae

Domain
In chain context
In PDB context

Structure of domain e3t1bD2

Domains in the same chain:

Download Pymol

e3t1bD1	D:1-88	HTH	HTH	winged
e3t1bD2	D:89-159,D:263-290	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bD3	D:160-262	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3t1bA1	A:1-88	HTH	HTH	winged
e3t1bA2	A:89-159,A:263-290	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bA3	A:160-262	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bB1	B:1-88	HTH	HTH	winged
e3t1bB2	B:89-159,B:263-290	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bB3	B:160-262	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bC4	C:1-87	HTH	HTH	winged
e3t1bC2	C:88-291	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bD1	D:1-88	HTH	HTH	winged
e3t1bD2	D:89-159,D:263-290	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3t1bD3	D:160-262	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3t1bD2 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3t1bC4	D:x,y,z->C:X,Y,Z	HTH	Interaction Interface Pymol
e3t1bC4	D:x,y,z->C:X,Y,Z	HTH	Interaction Interface Pymol
e3t1bB1	D:x,y,z->B:X,Y,Z	HTH	Interaction Interface Pymol
e3t1bB3	D:X,Y-1,Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol