Domain ID e3t1yD1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Alpha-L RNA-binding motif
  • F: Ribosomal_S4,S4
UID: 001552748
Type: Automatic domain
Parent: e4v4vAD1
Range: D:2-209
Ligands: ZN
PDB: 3t1y
PDB Description: 30S RIBOSOMAL PROTEIN S4
UniProt: P80373
Species:

Structure of domain e3t1yD1

Domains in the same chain:

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e3t1yD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif

Domains in the same PDB:

e3t1yB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e3t1yC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e3t1yC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e3t1yD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e3t1yE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e3t1yE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3t1yF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e3t1yG1 G:1-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e3t1yH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e3t1yH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e3t1yI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3t1yJ1 J:1-98 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e3t1yK1 K:1-119 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3t1yL1 L:4-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3t1yM1 M:2-126 HhH/H2TH H2TH H2TH
e3t1yN1 N:1-60 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e3t1yO2 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e3t1yP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e3t1yQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3t1yR2 R:16-88 HTH HTH tri-helical
e3t1yS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e3t1yT1 T:1-99 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e3t1yD1 of H-group "Ubiquitin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3t1yH1 D:Y,X,-Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e3t1yE3 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3t1yC1 D:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol