Domain ID e3t5oA3

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  • A: few secondary structure elements
  • X: EGF-like
  • H: LDL receptor-like module
  • T: LDL receptor-like module
  • F: Ldl_recept_a
UID: 000223900
Type: Manual and representative domain
Range: A:116-157
Ligands: CD
PDB: 3t5o
PDB Description: COMPLEMENT COMPONENT C6
UniProt: P13671
Hsap BLAST neighbor: P13671
Species: Homo sapiens

Structure of domain e3t5oA3

Domains in the same chain:

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e3t5oA1 A:1-58 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3t5oA2 A:59-115 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3t5oA3 A:116-157 EGF-like LDL receptor-like module LDL receptor-like module
e3t5oA4 A:158-498 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e3t5oA5 A:499-536 EGF-like EGF-related EGF/Laminin
e3t5oA6 A:537-608 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3t5oA7 A:620-680 EGF-like EGF-related Complement control module/SCR domain
e3t5oA8 A:681-744 EGF-like EGF-related Complement control module/SCR domain
e3t5oA9 A:750-764 EGF-like EGF-related EGF/Laminin
e3t5oA10 A:765-832 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors
e3t5oA11 A:833-860 EGF-like EGF-related EGF/Laminin
e3t5oA12 A:861-913 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors

Domains in the same PDB:

e3t5oA1 A:1-58 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3t5oA2 A:59-115 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3t5oA3 A:116-157 EGF-like LDL receptor-like module LDL receptor-like module
e3t5oA4 A:158-498 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e3t5oA5 A:499-536 EGF-like EGF-related EGF/Laminin
e3t5oA6 A:537-608 TSP-1 type 1 repeat TSP-1 type 1 repeat TSP-1 type 1 repeat
e3t5oA7 A:620-680 EGF-like EGF-related Complement control module/SCR domain
e3t5oA8 A:681-744 EGF-like EGF-related Complement control module/SCR domain
e3t5oA9 A:750-764 EGF-like EGF-related EGF/Laminin
e3t5oA10 A:765-832 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors
e3t5oA11 A:833-860 EGF-like EGF-related EGF/Laminin
e3t5oA12 A:861-913 Kazal-type serine protease inhibitors-like Kazal-type serine protease inhibitors Kazal-type serine protease inhibitors

Structural contacts of domain e3t5oA3 of H-group "LDL receptor-like module":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3t5oA4 A:x,y,z->A:X-1/2,-Y+1/2,-Z-1 Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains Interaction Interface Pymol
e3t5oA6 A:x,y,z->A:X,Y,Z-1 TSP-1 type 1 repeat Interaction Interface Pymol