| UID: | 000183468 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2fdiA1 |
| Range: | A:128-360 |
| Ligands: | AKG MN ZN |
| PDB: | 3thp |
| PDB Description: | Alkylated DNA repair protein alkB homolog 8 |
| UniProt: | Q96BT7 |
| Hsap BLAST neighbor: | Q96BT7 |
| Species: | Homo sapiens |
Structure of domain e3thpA2
Domains in the same chain:
| e3thpA1 | A:28-127 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3thpA2 | A:128-360 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
Domains in the same PDB:
| e3thpA1 | A:28-127 | Alpha-beta plaits | RNA-binding domain, RBD | RNA-binding domain, RBD |
| e3thpA2 | A:128-360 | jelly-roll | Double-stranded beta-helix | Double-stranded beta-helix |
Structural contacts of domain e3thpA2 of H-group "Double-stranded beta-helix":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3thpA1 | A:x,y,z->A:X,-Y+1,-Z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3thpA1 | A:X,-Y+1,-Z->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3thpA1 | A:x,y,z->A:-X+1,Y,-Z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3thpA1 | A:-X+1,Y,-Z->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3thpA1 | A:-X+1/2,-Y+1/2,Z-1/2->A:x,y,z | RNA-binding domain, RBD | Interaction Interface Pymol |
| e3thpA2 | A:x,y,z->A:-X,-Y+1,Z | Double-stranded beta-helix | Interaction Interface Pymol |
| e3thpA2 | A:-X,-Y+1,Z->A:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
| e3thpA2 | A:x,y,z->A:X-1/2,-Y+1/2,-Z+1/2 | Double-stranded beta-helix | Interaction Interface Pymol |
| e3thpA2 | A:X-1/2,-Y+1/2,-Z+1/2->A:x,y,z | Double-stranded beta-helix | Interaction Interface Pymol |
